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Rrid:scr_017014

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WebProper Citation: GenomeScope (RRID:SCR_017014) Description: Open source software package for fast genome analysis from unassembled short reads. Used to estimate … WebWe used GenomeScope (RRID:SCR_017014) to conduct a genome survey and visualise the k-mer plot . While we did not deem the k -mer counting method sufficiently accurate for …

RRID Resource Report ( RRID: SCR_017740) - scicrunch.org

WebProper Citation: GenomeScope (RRID:SCR_017014) Description: Open source software package for fast genome analysis from unassembled short reads. Used to estimate … WebApr 14, 2024 · Mouse Lewis lung carcinoma (LLC; ATCC, catalog no. CRL-1642, RRID:CVCL_4358) cell line was purchased from ATCC (RRID:SCR_001672). LLC-eGFP cell line was a gift from Professor Robert Brink. B16F10–3C melanoma cell line was a gift from Professor Wolfgang Weninger. Murine AT-3 mammary carcinoma (RRID:CVCL VR89) cell … thm filter

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WebTRIM28, a multi-domain protein, is crucial in the development of mouse embryos and the maintenance of embryonic stem cells’ (ESC) self-renewal potential. As the epigenetic factor modulating chromatin structure, TRIM28 regulates the expression of numerous genes and is associated with progression and poor prognosis in many types of cancer. Because of … WebJan 27, 2024 · Corrected PacBio reads generated from Canu v2.1.1 (Canu, RRID:SCR_015880) 49 were used to predict P. ovata genome size using genomescope2 v2.0 (GenomeScope, RRID:SCR_017014) 21 and findGSE v0.10 ... WebNov 9, 2024 · Raw reads from genome sequencing and assembly are deposited at the China National Gene Bank under reference number CNP0001160, which contains sample … thm file reader

Elevated enhancer-oncogene contacts and higher oncogene

A chromosome-level genome assembly of Plantago ovata

WebDNA copy-number analysis on diagnostic biopsies of 181 pediatric patients with T cell ALL (T-ALL) using array-comparative genomic hybridization and/or multiplex ligation-dependent probe amplification (MLPA) revealed recurrent monoallelic deletions affecting the chromosomal band 16q in sixteen patients (9%; Table S1).The minimal deleted area … WebNov 9, 2024 · Raw reads from genome sequencing and assembly are deposited at the China National Gene Bank under reference number CNP0001160, which contains sample information (CNS0315939), Hi-C raw data (CNX0286336) and stLFR raw data (CNX0286337). The project also has been deposited at NCBI under accession ID … thm file typeWebApr 14, 2024 · The Epigenomic Services from Diagenode (RRID:SCR_014807) carried out this assay. EPIC methylation array processing. After whole-genome amplification and enzymatic fragmentation, the samples were hybridized to the BeadChip, and scanning was conducted with Illumina iScan (RRID:SCR_016388). Idat files were exported and analyzed … thm find anmelden

"WebJun 25, 2024 · Jellyfish (RRID:SCR_005491) 30 and genomescope2 (RRID:SCR_017014) 31,32 were used to estimate the size, unique sequence content, and heterozygosity of the O. australiensis KR genome using 17-mers ... " - Rrid:scr_017014

Rrid:scr_017014

Chromosome-scale assembly of the yellow... Open …

WebJan 12, 2024 · JELLYFISH (Jellyfish, RRID:SCR_005491) generated a 17-mer distribution and GenomeScope (GenomeScope, RRID:SCR_017014) estimated the size where the main … WebSep 23, 2024 · The k -mer count histogram was analyzed by the online version of GenomeScope (GenomeScope, RRID:SCR_017014) [ 37] and the heterozygosity of the genome was estimated at 0.0383% ( Supplementary Fig. S2 ). The Long Terminal Repeat (LTR) Assembly Index (LAI) [ 38] metric was used to evaluate assembly continuity in DM …

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WebDec 21, 2024 · The histograms of the k -mer occurrences were processed by GenomeScope (GenomeScope, RRID:SCR_017014) [ 26 ], which estimated a genome haploid size of 653 and 616 Mb with ∼71% and 74% of unique content and a heterozygosity level of 0.65% and 0.77% from Illumina and BGI reads, respectively. Assembly of genomes WebAug 14, 2024 · 81 mer distributions using GenomeScope v1.0.0 (GenomeScope, RRID:SCR_017014) [14]. The histogram of 82 k-mer frequencies was estimated with 21 …

WebSciCrunch is a collaboratively edited knowledge base about scientific resources. It is a community portal for researchers and a content management system for data and databases. It is intended to provide a common source of data to the research community and the data about Research Resource Identifiers (), which can be used in scientific … WebWe used GenomeScope (RRID:SCR_017014) to conduct a genome survey and visualise the k-mer plot . While we did not deem the k -mer counting method sufficiently accurate for genome size estimation [ 38 ] , we used GenomeScope to estimate the genome-wide heterozygosity rates output which was 0.869–0.889%.

WebSep 19, 2024 · Here, we present a highly contiguous, fully phased, chromosome-level genome of ‘Honeycrisp’ apples, using PacBio HiFi, Omni-C, and Illumina sequencing … WebAug 17, 2024 · The T. molitor genome size was estimated using GenomeScope 15 (GenomeScope, RRID:SCR_017014) v1 with Illumina reads (Table S1, Extended data) and …

WebВ рубрике как это работает у них Research Resource Identifiers (RRIDs) [1] научный проект по систематизации общедоступных научных ресурсов изначально в области биоинформатики, а далее и для научных ди...

WebThe RRID index is a list of key biological reagents and resources aggregated from the most authoritative data sources for each resource type. Each of the records is also available … thm findeWebJan 27, 2024 · Corrected PacBio reads generated from Canu v2.1.1 (Canu, RRID:SCR_015880) 49 were used to predict P. ovata genome size using genomescope2 … thm find bibliothekWebAnalyses were performed using the R software environment (RRID: SCR_001905). For in vitro functional assays, differences between groups were assessed by the Kruskal-Wallis and Dunn’s multiple comparison test using GraphPad Prism 8 (GraphPad Software, San Diego, CA, USA, RRID: SCR_002798). Three independent experiments were performed for … thm find hebisWebJan 12, 2024 · GenomeScope (GenomeScope, RRID:SCR_017014) v1.0 [40] predicted a smaller genome of 794 Mb 228. from the same data (Figure S1b). 230. CC-BY-NC-ND 4.0 International license made available under a thm find buchWebPlantago ovata is cultivated for production of its seed husk (psyllium). When wet, the husk transforms into a mucilage with properties suitable for pharmaceutical industries, utilised in supplements for controlling blood cholesterol levels, and food thm firmaWebMar 1, 2024 · 2.2. Genome assembly and assessment. Illumina paired-end reads were used as the first quality control by FASTP (fastp, RRID: SCR_016962) [16] with the default … thmfmWebMar 1, 2024 · 2.2. Genome assembly and assessment. Illumina paired-end reads were used as the first quality control by FASTP (fastp, RRID: SCR_016962) [16] with the default parameter.JELLYFISH (v2.2.10) (Jellyfish, RRID: SCR_005491) [17] and PLATANUS (v2.2.2) (Platanus, RRID: SCR_015531) [18] were employed to estimate the genome size based on … thm fitnessstudio